ABOUT THIS RECORDspecies: Brugia malayi
miRNA family: let-7
source: miRBase, original name: bma-let-7 (MI0013319)
Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* CTGTCCAGCCTGCTAGCTTGCC mismatches: 3 bulges: 0 |
pre-miRNA
ATGCTAACGACCCTGAATGATAGCTTGCTCGATGAGGTAGTAGGTTGTATAGTTATGAGTTGTACCATAATCGGAGAAACTGTCCAGCCTGCTAGCTTGC
CGTGCGGGTCTATCATCCGTCCCC
dot-bracket secondary structure
........(((...((.(((((((((((.((..(((.((((((((((.((((((.(((..((...))...)))....)))))).)))))))))).)))..
)).))))).)))))))).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
ATGCTAACGACCCTGAATGATAGCTTGCTCGATGAGGTAGTAGGTTGTATAGTTATGAGTTGTACCATAATCGGAGAAACTGTCCAGCCTGCTAGCTTGC
CGTGCGGGTCTATCATCCGTCCCC
dot-bracket secondary structure
........(((...((.(((((((((((.((..(((.((((((((((.((((((.(((..((...))...)))....)))))).)))))))))).)))..
)).))))).)))))))).)))...
SIMILARITIES| miRBase pma-let-7a-2: 0.000002 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 4e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
