ABOUT THIS RECORDspecies: Brugia malayi
miRNA family: mir-9
source: miRBase, original name: bma-mir-9 (MI0013326)
Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTGGTTATCTAGCTGTATGA miRNA* ATAAAGCTAGGTTACCAAAGCT mismatches: 2 bulges: 0 |
pre-miRNA
GTATTGCAACTTTACTTTGGTTATCTAGCTGTATGAGTAAGTTACTGGCTTCATAAAGCTAGGTTACCAAAGCTAAGCACAATAC
dot-bracket secondary structure
((((((...(((..(((((((.((((((((.(((((((.((...)).)).))))).)))))))).)))))))..)))..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
GTATTGCAACTTTACTTTGGTTATCTAGCTGTATGAGTAAGTTACTGGCTTCATAAAGCTAGGTTACCAAAGCTAAGCACAATAC
dot-bracket secondary structure
((((((...(((..(((((((.((((((((.(((((((.((...)).)).))))).)))))))).)))))))..)))..))))))
SIMILARITIES| miRBase bma-mir-79: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 4e-28 |
Identical with: bma-mir-79 from miRBase (MNEST038107) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
