miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038099
species: Brugia malayi
miRNA family: mir-9
source: miRBase, original name: bma-mir-9 (MI0013326)

Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTTGGTTATCTAGCTGTATGA

miRNA*
ATAAAGCTAGGTTACCAAAGCT

mismatches: 2
bulges: 0

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pre-miRNA
GTATTGCAACTTTACTTTGGTTATCTAGCTGTATGAGTAAGTTACTGGCTTCATAAAGCTAGGTTACCAAAGCTAAGCACAATAC

dot-bracket secondary structure
((((((...(((..(((((((.((((((((.(((((((.((...)).)).))))).)))))))).)))))))..)))..))))))


SIMILARITIES
miRBase bma-mir-79: 4e-43

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 4e-28

Identical with: bma-mir-79 from miRBase (MNEST038107)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"




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