ABOUT THIS RECORDspecies: Brugia malayi
source: miRBase, original name: bma-mir-50 (MI0013330)
Taxonomy by NCBI:
Brugia malayi Brugia Onchocercidae Filarioidea Spirurida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATATGTCTGATATTCTTGGGTT miRNA* CCAGCATCTCAGACGTATCGGC mismatches: 2 bulges: 2 |
pre-miRNA
GCACTTCCTGCATATGCAGTGTTGATATGTCTGATATTCTTGGGTTGTGCAAAGTCAACCAGCATCTCAGACGTATCGGCCACTGTGTATT
dot-bracket secondary structure
(((.....))).((((((((((((((((((((((.((.((..(((((........))))))).)).))))))))))))).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
GCACTTCCTGCATATGCAGTGTTGATATGTCTGATATTCTTGGGTTGTGCAAAGTCAACCAGCATCTCAGACGTATCGGCCACTGTGTATT
dot-bracket secondary structure
(((.....))).((((((((((((((((((((((.((.((..(((((........))))))).)).))))))))))))).)))))))))..
SIMILARITIES| miRBase cbr-mir-50: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-50: 1e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Poole CB, Davis PJ, Jin J, McReynolds LA, Mol Biochem Parasitol. 169:87-94(2010)., "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi"
