ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: MIR1134
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAACAACAAGAAGAAGAAGAA miRNA* TTTCTTTTTCTCTTTTATTGTT mismatches: 3 bulges: 1 |
pre-miRNA
CAATTTGTTTTTTCTTTTTCTCTTTTATTGTTTTTTTTTAAATTTACCATGTCCACAGATCTACAACTCTGCCAAGATTTACCAAAAATGTTCAAATCAT
CCCCACTCAAGATCCTGACACAACAACAAGAAGAAGAAGAAGCTGCTGGT
dot-bracket secondary structure
......(((((((((((((((...((.((((...................(((....(((((.............(((((.............)))))..
.........)))))..))))))).))..))))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAATTTGTTTTTTCTTTTTCTCTTTTATTGTTTTTTTTTAAATTTACCATGTCCACAGATCTACAACTCTGCCAAGATTTACCAAAAATGTTCAAATCAT
CCCCACTCAAGATCCTGACACAACAACAAGAAGAAGAAGAAGCTGCTGGT
dot-bracket secondary structure
......(((((((((((((((...((.((((...................(((....(((((.............(((((.............)))))..
.........)))))..))))))).))..))))))))))))))).......
SIMILARITIES| miRBase tae-MIR1134: 0.00003 PMRD tae-miR1134: 0.00003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
