ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: lsy-6
source: miRBase, original name: cel-lsy-6 (MI0000801)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGTATGAGACGCATTTCG miRNA* AATGCGTCTAGTATCAAAATC mismatches: 2 bulges: 1 |
pre-miRNA
CCATCAAATGCGTCTAGTATCAAAATCATGTAAAAACTGTAAAACAGATTTTGTATGAGACGCATTTCGATGA
dot-bracket secondary structure
.((((((((((((((.(((.(((((((.(((............))))))))))))).)))))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR, Solexa
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
[3] Johnston RJ, Hobert O, Nature. 426:845-849(2003)., "A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans"
CCATCAAATGCGTCTAGTATCAAAATCATGTAAAAACTGTAAAACAGATTTTGTATGAGACGCATTTCGATGA
dot-bracket secondary structure
.((((((((((((((.(((.(((((((.(((............))))))))))))).)))))))))).)))).
SIMILARITIES| miRBase cbr-lsy-6: 0.0002 PMRD no hits microPC no hits | UniProt no hits RFAM lsy-6: 3e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR, Solexa
references
[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
[3] Johnston RJ, Hobert O, Nature. 426:845-849(2003)., "A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans"
