miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Heterorhabditis bacteriophora, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Caenorhabditis remanei, Nippostrongylus brasiliensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038265
species: Caenorhabditis elegans
miRNA family: lsy-6
source: miRBase, original name: cel-lsy-6 (MI0000801)

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGTATGAGACGCATTTCG

miRNA*
AATGCGTCTAGTATCAAAATC

mismatches: 2
bulges: 1

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pre-miRNA
CCATCAAATGCGTCTAGTATCAAAATCATGTAAAAACTGTAAAACAGATTTTGTATGAGACGCATTTCGATGA

dot-bracket secondary structure
.((((((((((((((.(((.(((((((.(((............))))))))))))).)))))))))).)))).


SIMILARITIES
miRBase cbr-lsy-6: 0.0002

PMRD no hits

microPC no hits
UniProt no hits

RFAM lsy-6: 3e-34

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, PCR, Solexa

references

[1] Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB, RNA. 10:1309-1322(2004)., "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
[2] Kato M, de Lencastre A, Pincus Z, Slack FJ, Genome Biol. 10:R54(2009)., "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development"
[3] Johnston RJ, Hobert O, Nature. 426:845-849(2003)., "A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans"




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