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Species belonging to selected taxon:
Caenorhabditis elegans
,
Caenorhabditis japonica
,
Caenorhabditis brenneri
,
Caenorhabditis remanei
ABOUT THIS RECORD
ID:
MNEST038419
species:
Caenorhabditis elegans
source:
miRBase, original name:
cel-mir-1828
(
MI0008196
)
Taxonomy by NCBI:
Caenorhabditis elegans
Caenorhabditis
Peloderinae
Rhabditidae
Rhabditoidea
Rhabditida
Chromadorea
Nematoda
Pseudocoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTGGAAGCATTTAAGTGATAGT
miRNA*
GATCACTTTTATCGGTTCCGGTCC
mismatches:
6
bulges:
1
View larger
pre-miRNA
GATCACTTTTATCGGTTCCGGTCC
CTCTGCAAAAAAGTGG
ACTGGAAGCATTTAAGTGATAGT
dot-bracket secondary structure
.(((((((..((.(.(((((((((
..((.......)).))
))))))).)))..)))))))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N,
Nat Biotechnol. 26:407-415(2008).
,
"Discovering microRNAs from deep sequencing data using miRDeep"