ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-1828 (MI0008196)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGGAAGCATTTAAGTGATAGT miRNA* GATCACTTTTATCGGTTCCGGTCC mismatches: 6 bulges: 1 |
pre-miRNA
GATCACTTTTATCGGTTCCGGTCCCTCTGCAAAAAAGTGGACTGGAAGCATTTAAGTGATAGT
dot-bracket secondary structure
.(((((((..((.(.(((((((((..((.......)).))))))))).)))..)))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
GATCACTTTTATCGGTTCCGGTCCCTCTGCAAAAAAGTGGACTGGAAGCATTTAAGTGATAGT
dot-bracket secondary structure
.(((((((..((.(.(((((((((..((.......)).))))))))).)))..)))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
