miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Caenorhabditis japonica, Caenorhabditis brenneri, Caenorhabditis remanei



ABOUT THIS RECORD

ID: MNEST038419
species: Caenorhabditis elegans
source: miRBase, original name: cel-mir-1828 (MI0008196)

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTGGAAGCATTTAAGTGATAGT

miRNA*
GATCACTTTTATCGGTTCCGGTCC

mismatches: 6
bulges: 1

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pre-miRNA
GATCACTTTTATCGGTTCCGGTCCCTCTGCAAAAAAGTGGACTGGAAGCATTTAAGTGATAGT

dot-bracket secondary structure
.(((((((..((.(.(((((((((..((.......)).))))))))).)))..)))))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"




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