ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: mir-34
source: miRBase, original name: crm-mir-34 (MI0011057)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAGTGTGGTTAGCTGGTTG miRNA* ACGGCTACCTTCACTGCCACC mismatches: 2 bulges: 3 |
pre-miRNA
GGACGGTGCTCGAGAGGCAGTGTGGTTAGCTGGTTGCATATTGAATTGACAACGGCTACCTTCACTGCCACCCCGAACATGTAGTCCA
dot-bracket secondary structure
((((.(((.(((.(.(((((((.(((.(((((.(((((........)).)))))))))))..))))))).)..))).)))...)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GGACGGTGCTCGAGAGGCAGTGTGGTTAGCTGGTTGCATATTGAATTGACAACGGCTACCTTCACTGCCACCCCGAACATGTAGTCCA
dot-bracket secondary structure
((((.(((.(((.(.(((((((.(((.(((((.(((((........)).)))))))))))..))))))).)..))).)))...)))).
SIMILARITIES| miRBase cel-mir-34: 9e-32 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 7e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
