miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038488
species: Caenorhabditis remanei
miRNA family: mir-34
source: miRBase, original name: crm-mir-34 (MI0011057)

Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGCAGTGTGGTTAGCTGGTTG

miRNA*
ACGGCTACCTTCACTGCCACC

mismatches: 2
bulges: 3

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pre-miRNA
GGACGGTGCTCGAGAGGCAGTGTGGTTAGCTGGTTGCATATTGAATTGACAACGGCTACCTTCACTGCCACCCCGAACATGTAGTCCA

dot-bracket secondary structure
((((.(((.(((.(.(((((((.(((.(((((.(((((........)).)))))))))))..))))))).)..))).)))...)))).


SIMILARITIES
miRBase cel-mir-34: 9e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-449: 7e-39

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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