ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-1175
source: miRBase, original name: lgi-mir-1175 (MI0010142)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATTCAACTCCTCCAACTGC miRNA* AGTGGAGAGAGTTTTATCTCATC mismatches: 2 bulges: 2 |
pre-miRNA
TGTTCAATGTAGTGGAGAGAGTTTTATCTCATCTCTCAAACAAAACAGATGAGATTCAACTCCTCCAACTGCAAGTTTCACCTGTTT
dot-bracket secondary structure
.......((((((((((.(((((..(((((((((............)))))))))..))))))))).))))))..............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TGTTCAATGTAGTGGAGAGAGTTTTATCTCATCTCTCAAACAAAACAGATGAGATTCAACTCCTCCAACTGCAAGTTTCACCTGTTT
dot-bracket secondary structure
.......((((((((((.(((((..(((((((((............)))))))))..))))))))).))))))..............
SIMILARITIES| miRBase cte-mir-1175: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
