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Species belonging to selected taxon:

Lottia gigantea



ABOUT THIS RECORD

ID: MNEST038892
species: Lottia gigantea
miRNA family: mir-1175
source: miRBase, original name: lgi-mir-1175 (MI0010142)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGATTCAACTCCTCCAACTGC

miRNA*
AGTGGAGAGAGTTTTATCTCATC

mismatches: 2
bulges: 2

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pre-miRNA
TGTTCAATGTAGTGGAGAGAGTTTTATCTCATCTCTCAAACAAAACAGATGAGATTCAACTCCTCCAACTGCAAGTTTCACCTGTTT

dot-bracket secondary structure
.......((((((((((.(((((..(((((((((............)))))))))..))))))))).))))))..............


SIMILARITIES
miRBase cte-mir-1175: 0.000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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