miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000389
species: Citrus sinensis
miRNA family: MIR3518
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGACCTTTGGGGATATTTGGT

miRNA*
 CGTTAGATCCCCAAAGGTTCCC

mismatches: 5
bulges: 1
View larger
pre-miRNA
 GTCAGGGTTTTGGACCTTTGGGGATATTTGGTGGCCCAAATTCCTTAAGGCTGTCTGGAAATACCGGATTCAAAGCAATTTTGGTGGTGCTCCGGGGTTG
GCTTTCACGTGGAATACTGGGGATATTTATAGGTCCTGGATTGAAGAACTGGTTAGCACTTTCACGTATAATCAAGTGGCCCTCCCCAACGGGAAATCTG
AATTGAGGCTTGCCCCCGTTAGATCCCCAAAGGTTCCCCGTTTATT

dot-bracket secondary structure
....(((....((((((((((((((...((..((((((....((..((.(((((((((.....))))))....)))..))..))))).)))..(((((.(
(((((.((((((((..((((((.((....))..))))))..((..((.....))..)).))))))))....(((.((..(((........)))..)).))
)...)))))).)))))))....))))))))))))))))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;