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Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000389
species: Citrus sinensis
miRNA family: MIR3518
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGACCTTTGGGGATATTTGGT

miRNA*
CGTTAGATCCCCAAAGGTTCCC

mismatches: 5
bulges: 1

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pre-miRNA
GTCAGGGTTTTGGACCTTTGGGGATATTTGGTGGCCCAAATTCCTTAAGGCTGTCTGGAAATACCGGATTCAAAGCAATTTTGGTGGTGCTCCGGGGTTG
GCTTTCACGTGGAATACTGGGGATATTTATAGGTCCTGGATTGAAGAACTGGTTAGCACTTTCACGTATAATCAAGTGGCCCTCCCCAACGGGAAATCTG
AATTGAGGCTTGCCCCCGTTAGATCCCCAAAGGTTCCCCGTTTATT


dot-bracket secondary structure
....(((....((((((((((((((...((..((((((....((..((.(((((((((.....))))))....)))..))..))))).)))..(((((.(
(((((.((((((((..((((((.((....))..))))))..((..((.....))..)).))))))))....(((.((..(((........)))..)).))
)...)))))).)))))))....))))))))))))))))).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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