ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-1994
source: miRBase, original name: lgi-mir-1994b (MI0010254)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGACAGTGTGTCCTCCCTCA miRNA* AGGAAGAACATTCTGTCTACATG mismatches: 4 bulges: 1 |
pre-miRNA
TTCTCAGGAAGAACATTCTGTCTACATGTTACACTAACCATGAGACAGTGTGTCCTCCCTCAGGCTCA
dot-bracket secondary structure
.(((.(((.((.((((.((((((.((((..........)))))))))).)))).)).))).)))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TTCTCAGGAAGAACATTCTGTCTACATGTTACACTAACCATGAGACAGTGTGTCCTCCCTCAGGCTCA
dot-bracket secondary structure
.(((.(((.((.((((.((((((.((((..........)))))))))).)))).)).))).)))....
SIMILARITIES| miRBase cla-mir-1994: 0.000003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
