miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aplysia californica, Lottia gigantea, Crassostrea gigas, Biomphalaria glabrata, Mytilus californianus, Euprymna scolopes, Lymnaea stagnalis



ABOUT THIS RECORD

ID: MNEST038903
species: Lottia gigantea
miRNA family: mir-1994
source: miRBase, original name: lgi-mir-1994b (MI0010254)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGACAGTGTGTCCTCCCTCA

miRNA*
AGGAAGAACATTCTGTCTACATG

mismatches: 4
bulges: 1

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pre-miRNA
TTCTCAGGAAGAACATTCTGTCTACATGTTACACTAACCATGAGACAGTGTGTCCTCCCTCAGGCTCA

dot-bracket secondary structure
.(((.(((.((.((((.((((((.((((..........)))))))))).)))).)).))).)))....


SIMILARITIES
miRBase cla-mir-1994: 0.000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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