ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-2001
source: miRBase, original name: lgi-mir-2001 (MI0010260)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGACCGTTATAATGGGCATT miRNA* TGCTCCTTATTACGATCAGAAGG mismatches: 4 bulges: 0 |
pre-miRNA
TACCGTGACCTTTGTGACCGTTATAATGGGCATTTAGAATTGAAGTGCTCCTTATTACGATCAGAAGGGTCTCGTTC
dot-bracket secondary structure
...((.(((((((.(((.(((.((((.((((((((.......)))))))).)))).))).))).))))))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TACCGTGACCTTTGTGACCGTTATAATGGGCATTTAGAATTGAAGTGCTCCTTATTACGATCAGAAGGGTCTCGTTC
dot-bracket secondary structure
...((.(((((((.(((.(((.((((.((((((((.......)))))))).)))).))).))).))))))).))...
SIMILARITIES| miRBase cte-mir-2001: 0.00001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
