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Species belonging to selected taxon:

Lottia gigantea



ABOUT THIS RECORD

ID: MNEST038904
species: Lottia gigantea
miRNA family: mir-2001
source: miRBase, original name: lgi-mir-2001 (MI0010260)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGTGACCGTTATAATGGGCATT

miRNA*
TGCTCCTTATTACGATCAGAAGG

mismatches: 4
bulges: 0

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pre-miRNA
TACCGTGACCTTTGTGACCGTTATAATGGGCATTTAGAATTGAAGTGCTCCTTATTACGATCAGAAGGGTCTCGTTC

dot-bracket secondary structure
...((.(((((((.(((.(((.((((.((((((((.......)))))))).)))).))).))).))))))).))...


SIMILARITIES
miRBase cte-mir-2001: 0.00001

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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