ABOUT THIS RECORDspecies: Schistosoma japonicum
miRNA family: bantam
source: miRBase, original name: sja-bantam (MI0010670)
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATCGCGATTAAAGCTGGT miRNA* CGGCTTTTATTGCGCTCTGAGA mismatches: 5 bulges: 0 |
pre-miRNA
AAGTCGGCTTTTATTGCGCTCTGAGAAAAACCAATTCATTGCTTTTTTTATTTATCTGAGATCGCGATTAAAGCTGGTTT
dot-bracket secondary structure
((..(((((((.((((((.(((.(((((((.(((....))).))))........))).))).)))))).)))))))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
[2] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
AAGTCGGCTTTTATTGCGCTCTGAGAAAAACCAATTCATTGCTTTTTTTATTTATCTGAGATCGCGATTAAAGCTGGTTT
dot-bracket secondary structure
((..(((((((.((((((.(((.(((((((.(((....))).))))........))).))).)))))).)))))))..))
SIMILARITIES| miRBase sma-bantam: 0.000000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
[2] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
