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Species belonging to selected taxon:

Schistosoma mansoni, Schistosoma japonicum



ABOUT THIS RECORD

ID: MNEST038953
species: Schistosoma japonicum
miRNA family: bantam
source: miRBase, original name: sja-bantam (MI0010670)

Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGATCGCGATTAAAGCTGGT

miRNA*
CGGCTTTTATTGCGCTCTGAGA

mismatches: 5
bulges: 0

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pre-miRNA
AAGTCGGCTTTTATTGCGCTCTGAGAAAAACCAATTCATTGCTTTTTTTATTTATCTGAGATCGCGATTAAAGCTGGTTT

dot-bracket secondary structure
((..(((((((.((((((.(((.(((((((.(((....))).))))........))).))).)))))).)))))))..))


SIMILARITIES
miRBase sma-bantam: 0.000000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa

references

[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
[2] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"




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