ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR1448
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCCCACACCTCCCATCCC miRNA* GATGGGTGAGTTGGGAAAATA mismatches: 3 bulges: 2 |
pre-miRNA
GGGAAGAAGACTGGACTGGGGGAAGTCTTGGAGATGGGTGAGTTGGGAAAATAATAACTTTCTTCACGAAAGAAAGCAATTTTTTTCCCACACCTCCCAT
CCCTAAGATTTTCTTCAGTTCCTTCCTCTCTT
dot-bracket secondary structure
((((.((((...(((((((((((((((((((.((((((...((((((((((.(((..(((((((.....)))))))..))).)))))))).))..)))))
).))))))))))))))))))))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGAAGAAGACTGGACTGGGGGAAGTCTTGGAGATGGGTGAGTTGGGAAAATAATAACTTTCTTCACGAAAGAAAGCAATTTTTTTCCCACACCTCCCAT
CCCTAAGATTTTCTTCAGTTCCTTCCTCTCTT
dot-bracket secondary structure
((((.((((...(((((((((((((((((((.((((((...((((((((((.(((..(((((((.....)))))))..))).)))))))).))..)))))
).))))))))))))))))))))))).))))..
SIMILARITIES| miRBase csi-MIR472: 2e-33 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
