ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR160
source: miRBase, original name: pab-MIR160b (MI0016117)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCATAGAGAGAGCCAAGCAGA mismatches: 3 bulges: 0 |
pre-miRNA
GTTGGGGGCACCGCTTATCTGCCTGGCTCCCTGTATGCCATCTGCGTTGCTTATCAAGAGCGGGATATGCCTCACAGTTGGCATAGAGAGAGCCAAGCAG
AACTGCTGTTTCTAGC
dot-bracket secondary structure
(((((..(((..((...(((((.((((((.((.(((((((.(((.(..((.((((........)))).))..).))).))))))).)).)))))).))))
)...)))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
GTTGGGGGCACCGCTTATCTGCCTGGCTCCCTGTATGCCATCTGCGTTGCTTATCAAGAGCGGGATATGCCTCACAGTTGGCATAGAGAGAGCCAAGCAG
AACTGCTGTTTCTAGC
dot-bracket secondary structure
(((((..(((..((...(((((.((((((.((.(((((((.(((.(..((.((((........)))).))..).))).))))))).)).)))))).))))
)...)))))..)))))
SIMILARITIES| miRBase smo-MIR160a: 0.00000002 PMRD smo-miR160a: 0.00000002 microPC miR160: 0.000006 | UniProt no hits RFAM mir-160: 0.000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
