miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039375
species: Picea abies
miRNA family: MIR160
source: miRBase, original name: pab-MIR160b (MI0016117)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCATAGAGAGAGCCAAGCAGA

mismatches: 3
bulges: 0

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pre-miRNA
GTTGGGGGCACCGCTTATCTGCCTGGCTCCCTGTATGCCATCTGCGTTGCTTATCAAGAGCGGGATATGCCTCACAGTTGGCATAGAGAGAGCCAAGCAG
A
ACTGCTGTTTCTAGC


dot-bracket secondary structure
(((((..(((..((...(((((.((((((.((.(((((((.(((.(..((.((((........)))).))..).))).))))))).)).)))))).))))
)
...)))))..)))))



SIMILARITIES
miRBase smo-MIR160a: 0.00000002

PMRD smo-miR160a: 0.00000002

microPC miR160: 0.000006
UniProt no hits

RFAM mir-160: 0.000002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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