ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR166
source: miRBase, original name: pab-MIR166a (MI0016118)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGCTATCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
GGAGATCTTGGTTGAGGGGAATGCTATCTGGCTCGAGGTCGCCTTCCTTCGTCGTCGGACCAGGCTTCATTCCTCTCTACTTGGACTTCC
dot-bracket secondary structure
((((.(((.(((.((((((((((...(((((..(((.(.((........)).).)))..)))))...)))))))))).))).))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
GGAGATCTTGGTTGAGGGGAATGCTATCTGGCTCGAGGTCGCCTTCCTTCGTCGTCGGACCAGGCTTCATTCCTCTCTACTTGGACTTCC
dot-bracket secondary structure
((((.(((.(((.((((((((((...(((((..(((.(.((........)).).)))..)))))...)))))))))).))).))).))))
SIMILARITIES| miRBase vvi-MIR166b: 0.000001 PMRD vvi-miR166b: 0.000001 microPC miR166: 0.000001 | UniProt no hits RFAM mir-166: 0.00002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
