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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039376
species: Picea abies
miRNA family: MIR166
source: miRBase, original name: pab-MIR166a (MI0016118)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCTC

miRNA*
GGAATGCTATCTGGCTCGAGG

mismatches: 5
bulges: 0

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pre-miRNA
GGAGATCTTGGTTGAGGGGAATGCTATCTGGCTCGAGGTCGCCTTCCTTCGTCGTCGGACCAGGCTTCATTCCTCTCTACTTGGACTTCC

dot-bracket secondary structure
((((.(((.(((.((((((((((...(((((..(((.(.((........)).).)))..)))))...)))))))))).))).))).))))


SIMILARITIES
miRBase vvi-MIR166b: 0.000001

PMRD vvi-miR166b: 0.000001

microPC miR166: 0.000001
UniProt no hits

RFAM mir-166: 0.00002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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