ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR951
source: miRBase, original name: pab-MIR951 (MI0016131)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTCTTGACGTCTGGACCACG miRNA* CGGTCCAGTCGTCAAGAACACC mismatches: 2 bulges: 0 |
pre-miRNA
AGGAAGCGAAGGTGTTCTTGACGTCTGGACCACGTGGTTTGCTTTAAGATTTGCAGTAATATCCCATCAACTATCGCGGTCCAGTCGTCAAGAACACCTT
TGCTTTCA
dot-bracket secondary structure
.((((((((((((((((((((((.(((((((.((((((((((..........))).............))))).)).))))))).)))))))))))))))
))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
AGGAAGCGAAGGTGTTCTTGACGTCTGGACCACGTGGTTTGCTTTAAGATTTGCAGTAATATCCCATCAACTATCGCGGTCCAGTCGTCAAGAACACCTT
TGCTTTCA
dot-bracket secondary structure
.((((((((((((((((((((((.(((((((.((((((((((..........))).............))))).)).))))))).)))))))))))))))
))))))).
SIMILARITIES| miRBase pta-MIR951: 0.000000000006 PMRD pta-miR951: 0.000000000006 microPC miR951: 0.000005 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
