ABOUT THIS RECORDspecies: Pinus taeda
source: miRBase, original name: pta-MIR166c (MI0005784)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGGACCAGGCTTCATCCCAG miRNA* GGGGGATGCTGAGGTGTTGGAT mismatches: 2 bulges: 3 |
pre-miRNA
ACCAATCGAATCCGGACCAGGCTTCATCCCAGGCATCTGGACCCAATCGACAGCAGCTCCTTTAGCCTTTGAAAGGAACTCTGTCAAGGTCTCCTCTGCT
ATAGACAGGAGTCCAGCGGGGCTAGCATCTCTTGGGGGATGCTGAGGTGTTGGATTATGTTGGT
dot-bracket secondary structure
((((((..((((((((((.(((.((.(((((((.((((((.(((....(((((.((.((((((........)))))).)))))))..((.(((((...(.
...)..))))).))...))).)))).))..))))))))).)))..))).)))))))..))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
ACCAATCGAATCCGGACCAGGCTTCATCCCAGGCATCTGGACCCAATCGACAGCAGCTCCTTTAGCCTTTGAAAGGAACTCTGTCAAGGTCTCCTCTGCT
ATAGACAGGAGTCCAGCGGGGCTAGCATCTCTTGGGGGATGCTGAGGTGTTGGATTATGTTGGT
dot-bracket secondary structure
((((((..((((((((((.(((.((.(((((((.((((((.(((....(((((.((.((((((........)))))).)))))))..((.(((((...(.
...)..))))).))...))).)))).))..))))))))).)))..))).)))))))..))))))
SIMILARITIES| miRBase far-MIR166: 0.0000000001 PMRD pta-miR166c: 6e-90 microPC no hits | UniProt sp|Q39123|ATHB8_ARATH: 4e-21 RFAM no hits |
Identical with: pta-miR166c from PMRD (MNEST051560) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
