miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST039422
species: Pinus taeda
source: miRBase, original name: pta-MIR166c (MI0005784)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCGGACCAGGCTTCATCCCAG

miRNA*
GGGGGATGCTGAGGTGTTGGAT

mismatches: 2
bulges: 3

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pre-miRNA
ACCAATCGAATCCGGACCAGGCTTCATCCCAGGCATCTGGACCCAATCGACAGCAGCTCCTTTAGCCTTTGAAAGGAACTCTGTCAAGGTCTCCTCTGCT
ATAGACAGGAGTCCAGCGGGGCTAGCATCTCTTGGGGGATGCTGAGGTGTTGGATTATGTTGGT


dot-bracket secondary structure
((((((..((((((((((.(((.((.(((((((.((((((.(((....(((((.((.((((((........)))))).)))))))..((.(((((...(.
...)..))))).))...))).)))).))..))))))))).)))..))).)))))))..))))))



SIMILARITIES
miRBase far-MIR166: 0.0000000001

PMRD pta-miR166c: 6e-90

microPC no hits
UniProt sp|Q39123|ATHB8_ARATH: 4e-21

RFAM no hits

Identical with: pta-miR166c from PMRD (MNEST051560)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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