ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR157
source: miRBase, original name: rco-MIR156h (MI0013377)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
TGTTGTTGACAGAAGATAGAGAGCACAGATGATGATGTGCAATGACTTTTTCTGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTTC
dot-bracket secondary structure
...((.(((((((((((((((((((((((.(((((.(((((...........))))).))).)).)))))))))))))).))))))))).)).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TGTTGTTGACAGAAGATAGAGAGCACAGATGATGATGTGCAATGACTTTTTCTGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTTC
dot-bracket secondary structure
...((.(((((((((((((((((((((((.(((((.(((((...........))))).))).)).)))))))))))))).))))))))).)).....
SIMILARITIES| miRBase ptc-MIR156j: 1e-28 PMRD ptc-miR156j: 1e-28 microPC miR157: 6e-27 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
