ABOUT THIS RECORDspecies: Glycine soja
miRNA family: MIR167
source: miRBase, original name: gso-MIR167a (MI0015357)
Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGTGGCTGCTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
GCAGCAGTTGAAGCTGCCAGCATGATCTGAGTTTACCTTCTATTGGTAAGAACAGATCATGTGGCTGCTTCACCTGTTGA
dot-bracket secondary structure
.((((((.((((((.((((.(((((((((..((((((.......))))))..))))))))))))).)))))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
GCAGCAGTTGAAGCTGCCAGCATGATCTGAGTTTACCTTCTATTGGTAAGAACAGATCATGTGGCTGCTTCACCTGTTGA
dot-bracket secondary structure
.((((((.((((((.((((.(((((((((..((((((.......))))))..))))))))))))).)))))).)))))).
SIMILARITIES| miRBase gma-MIR167g: 6e-39 PMRD gma-miR167n: 1e-30 microPC miR167: 1e-30 | UniProt no hits RFAM MIR167_1: 0.00000002 |
Identical with: miR167 from microPC (MNEST045751) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
