ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR169
source: miRBase, original name: mtr-MIR169j (MI0005625)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTTCTTGACTACA mismatches: 4 bulges: 0 |
pre-miRNA
GAGTGCAGCCAAGGATGACTTGCCGGTAATATATCTAATTCCTTGGTTTCTTCCGGCAAGTTGTTCTTGACTACATT
dot-bracket secondary structure
.((((.((.((((((..(((((((((........((((....))))......)))))))))..)))))).)).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GAGTGCAGCCAAGGATGACTTGCCGGTAATATATCTAATTCCTTGGTTTCTTCCGGCAAGTTGTTCTTGACTACATT
dot-bracket secondary structure
.((((.((.((((((..(((((((((........((((....))))......)))))))))..)))))).)).))))
SIMILARITIES| miRBase vvi-MIR169k: 0.00000006 PMRD vvi-miR169k: 0.00000006 microPC miR169: 0.000003 | UniProt no hits RFAM MIR169_2: 4e-37 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
