ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR171
source: miRBase, original name: mtr-MIR171d (MI0005619)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
TAATGAGATATTGGCCTGGTTCACTCAGACCAAGTGATAAACCACTAAGATACAGTATTGTACTTGTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATC
TCACT
dot-bracket secondary structure
)..((((((((((((.(((((((.(((((((.......(((((((((((.(((......))))))).)))))))..))))))).))))))).)))))))))
)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
TAATGAGATATTGGCCTGGTTCACTCAGACCAAGTGATAAACCACTAAGATACAGTATTGTACTTGTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATC
TCACT
dot-bracket secondary structure
)..((((((((((((.(((((((.(((((((.......(((((((((((.(((......))))))).)))))))..))))))).))))))).)))))))))
)))..
SIMILARITIES| miRBase mtr-MIR171g: 6.0E-55 PMRD mtr-miR171g: 6.0E-55 microPC miR171: 9.0E-14 | UniProt no hits RFAM 1MIR171_1: 1.0E-53 |
Identical with: mtr-miR171d from PMRD (MNEST048722), mtr-miR171g from PMRD , mtr-MIR171g from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
