ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR159
source: miRBase, original name: ptc-MIR159d (MI0002198)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCT miRNA* GAGCTTTCTTTGGTTCAAAAT mismatches: 5 bulges: 0 |
pre-miRNA
TTGTAAATTTGGGAGCTTTCTTTGGTTCAAAATGAGGAAAGAAAGTGGGTATACTCGTCTGCTTGTTCATGGATACCTCTGGGTTGCGCAGGATATATTA
GTTAGGGCTACAGCTTAAGGGTTTGCATGGCCAAGGAGACGTTGCCTGCCTTCTCCTTTCGTTTCTTGGATTGAAGGGAGCTCCTACATGTATC
dot-bracket secondary structure
.........((((((((..(((..(((((((((((((..((((.(..((((....(((((.((((..((((.(.(((..(((((((.((..(((......
)))...))..)))))))..))).).))))..)))).))))).))))..).))))..)))))))..))))))..)))..))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TTGTAAATTTGGGAGCTTTCTTTGGTTCAAAATGAGGAAAGAAAGTGGGTATACTCGTCTGCTTGTTCATGGATACCTCTGGGTTGCGCAGGATATATTA
GTTAGGGCTACAGCTTAAGGGTTTGCATGGCCAAGGAGACGTTGCCTGCCTTCTCCTTTCGTTTCTTGGATTGAAGGGAGCTCCTACATGTATC
dot-bracket secondary structure
.........((((((((..(((..(((((((((((((..((((.(..((((....(((((.((((..((((.(.(((..(((((((.((..(((......
)))...))..)))))))..))).).))))..)))).))))).))))..).))))..)))))))..))))))..)))..))))))))........
SIMILARITIES| miRBase pta-MIR319: 0.00001 PMRD ptc-miR159d: 9e-108 microPC miR319: 0.00001 | UniProt no hits RFAM MIR159: 2e-106 |
Identical with: ptc-miR159d from PMRD (MNEST051605) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
