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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041302
species: Populus trichocarpa
miRNA family: MIR159
source: miRBase, original name: ptc-MIR159d (MI0002198)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGGGAGCTCCT

miRNA*
GAGCTTTCTTTGGTTCAAAAT

mismatches: 5
bulges: 0

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pre-miRNA
TTGTAAATTTGGGAGCTTTCTTTGGTTCAAAATGAGGAAAGAAAGTGGGTATACTCGTCTGCTTGTTCATGGATACCTCTGGGTTGCGCAGGATATATTA
GTTAGGGCTACAGCTTAAGGGTTTGCATGGCCAAGGAGACGTTGCCTGCCTTCTCCTTTCGTTTCTTGGATTGAAGGGAGCTCCTACATGTATC


dot-bracket secondary structure
.........((((((((..(((..(((((((((((((..((((.(..((((....(((((.((((..((((.(.(((..(((((((.((..(((......
)))...))..)))))))..))).).))))..)))).))))).))))..).))))..)))))))..))))))..)))..))))))))........



SIMILARITIES
miRBase pta-MIR319: 0.00001

PMRD ptc-miR159d: 9e-108

microPC miR319: 0.00001
UniProt no hits

RFAM MIR159: 2e-106

Identical with: ptc-miR159d from PMRD (MNEST051605)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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