miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042306
species: Oryza sativa
miRNA family: MIR1882
source: miRBase, original name: osa-MIR1882d (MI0008291)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGATTGCTTTCAAGGTCATTTCTT

miRNA*
 GAAATGATCTTGGACGCAATCTAG

mismatches: 2
bulges: 0
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pre-miRNA
 TGTTATCGTTACCAATATCCTAGATTGCTTTCAAGGTCATTTCTTTAGGAAACCCCATTCCCATAAATTCAGTATCCAAAGATGGTTGTTGTATCTATGG
GAATAAGGGTTCCCTAACGAAATGATCTTGGACGCAATCTAGGAGTTTGCTGATAATAAC

dot-bracket secondary structure
.(((((..(((.(((..(((((((((((.((((((((((((((.(((((.(((((.(((((((((.((.(((((.(((....))).))))).)).)))))
))))..))))).))))).)))))))))))))).)))))))))))..))).)))..)))))


SIMILARITIES
miRBase osa-MIR1317: 3e-70

PMRD osa-miR1882d: 1e-87

microPC no hits		UniProt no hits

RFAM no hits

Identical with: osa-miR1882d from PMRD (MNEST049182)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"



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