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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST042306
species: Oryza sativa
miRNA family: MIR1882
source: miRBase, original name: osa-MIR1882d (MI0008291)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGATTGCTTTCAAGGTCATTTCTT

miRNA*
GAAATGATCTTGGACGCAATCTAG

mismatches: 2
bulges: 0

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pre-miRNA
TGTTATCGTTACCAATATCCTAGATTGCTTTCAAGGTCATTTCTTTAGGAAACCCCATTCCCATAAATTCAGTATCCAAAGATGGTTGTTGTATCTATGG
GAATAAGGGTTCCCTAACGAAATGATCTTGGACGCAATCTAGGAGTTTGCTGATAATAAC


dot-bracket secondary structure
.(((((..(((.(((..(((((((((((.((((((((((((((.(((((.(((((.(((((((((.((.(((((.(((....))).))))).)).)))))
))))..))))).))))).)))))))))))))).)))))))))))..))).)))..)))))



SIMILARITIES
miRBase osa-MIR1317: 3e-70

PMRD osa-miR1882d: 1e-87

microPC no hits
UniProt no hits

RFAM no hits

Identical with: osa-miR1882d from PMRD (MNEST049182)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




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