ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR156
source: miRBase, original name: sbi-MIR156e (MI0001856)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGCGAGCAC miRNA* GCTCGCTTCTCTTTCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
CGATTAGGCCCTGAAGAGATTGACAGAAGAGAGCGAGCACCCGGCGCGGCGGCCGGCATGGAGCGCATGCCGTCCCCGCCGCGTGCTCGCTTCTCTTTCT
GTCAGCCTCTCTCTCGTCCTGGG
dot-bracket secondary structure
...(((((.(..((((((..((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))
))))..)))).))..).))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CGATTAGGCCCTGAAGAGATTGACAGAAGAGAGCGAGCACCCGGCGCGGCGGCCGGCATGGAGCGCATGCCGTCCCCGCCGCGTGCTCGCTTCTCTTTCT
GTCAGCCTCTCTCTCGTCCTGGG
dot-bracket secondary structure
...(((((.(..((((((..((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))
))))..)))).))..).))))).
SIMILARITIES| miRBase zma-MIR156k: 1e-50 PMRD sbi-miR156e: 1e-65 microPC miR156: 2e-30 | UniProt no hits RFAM mir-156: 3e-42 |
Identical with: sbi-miR156e from PMRD (MNEST054397) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
