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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042489
species: Sorghum bicolor
miRNA family: MIR156
source: miRBase, original name: sbi-MIR156e (MI0001856)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGCGAGCAC

miRNA*
GCTCGCTTCTCTTTCTGTCAGC

mismatches: 0
bulges: 2

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pre-miRNA
CGATTAGGCCCTGAAGAGATTGACAGAAGAGAGCGAGCACCCGGCGCGGCGGCCGGCATGGAGCGCATGCCGTCCCCGCCGCGTGCTCGCTTCTCTTTCT
GTCAGC
CTCTCTCTCGTCCTGGG


dot-bracket secondary structure
...(((((.(..((((((..((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))
))))..
)))).))..).))))).



SIMILARITIES
miRBase zma-MIR156k: 1e-50

PMRD sbi-miR156e: 1e-65

microPC miR156: 2e-30
UniProt no hits

RFAM mir-156: 3e-42

Identical with: sbi-miR156e from PMRD (MNEST054397)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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