ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR159
source: miRBase, original name: sbi-MIR159 (MI0001572)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* AAGCTCCTATCATTCCAATGA mismatches: 4 bulges: 0 |
pre-miRNA
AGCGAAGCTCCTATCATTCCAATGAAGGGCCCTTTTCATGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTATGTGTGTATG
TACTCTAGAGGGCCCGAGAAGAGATTCATGTGGTCGTCAGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGTCCCCTTGCTGGCCG
CTCTTTGGATTGAAGGGAGCTCTGCA
dot-bracket secondary structure
.(((.(((((((.(((.(((((.((..((((.....((.(((((((.(.(((.((((.(((((....((((...(((((((((....((((((....)))
)))....((.((((((.(((....))).)).)))).))......)))))))))...))))....))))).)))).))).).)))).)))..))..)))).
.)).))))).))).))))))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGCGAAGCTCCTATCATTCCAATGAAGGGCCCTTTTCATGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTATGTGTGTATG
TACTCTAGAGGGCCCGAGAAGAGATTCATGTGGTCGTCAGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGTCCCCTTGCTGGCCG
CTCTTTGGATTGAAGGGAGCTCTGCA
dot-bracket secondary structure
.(((.(((((((.(((.(((((.((..((((.....((.(((((((.(.(((.((((.(((((....((((...(((((((((....((((((....)))
)))....((.((((((.(((....))).)).)))).))......)))))))))...))))....))))).)))).))).).)))).)))..))..)))).
.)).))))).))).))))))).))).
SIMILARITIES| miRBase ssp-MIR159a: 4e-67 PMRD sof-miR159a: 4e-67 microPC miR319: 1e-23 | UniProt no hits RFAM MIR159: 2e-125 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
