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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042494
species: Sorghum bicolor
miRNA family: MIR159
source: miRBase, original name: sbi-MIR159 (MI0001572)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG

miRNA*
AAGCTCCTATCATTCCAATGA

mismatches: 4
bulges: 0

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pre-miRNA
AGCGAAGCTCCTATCATTCCAATGAAGGGCCCTTTTCATGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTATGTGTGTATG
TACTCTAGAGGGCCCGAGAAGAGATTCATGTGGTCGTCAGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGTCCCCTTGCTGGCCG
CTCTTTGGATTGAAGGGAGCTCTGCA


dot-bracket secondary structure
.(((.(((((((.(((.(((((.((..((((.....((.(((((((.(.(((.((((.(((((....((((...(((((((((....((((((....)))
)))....((.((((((.(((....))).)).)))).))......)))))))))...))))....))))).)))).))).).)))).)))..))..)))).
.)).))))).))).))))))).))).



SIMILARITIES
miRBase ssp-MIR159a: 4e-67

PMRD sof-miR159a: 4e-67

microPC miR319: 1e-23
UniProt no hits

RFAM MIR159: 2e-125

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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