ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR160
source: miRBase, original name: sbi-MIR160d (MI0001507)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCA mismatches: 3 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCGCTTAGCTGCCAACAACTCATACTACGTTGTTAACGACGTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((..(((.(((..((((............((((((....)))))))))).)))..)))..))))))))).))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"
TGCCTGGCTCCCTGTATGCCACTCGCTTAGCTGCCAACAACTCATACTACGTTGTTAACGACGTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((..(((.(((..((((............((((((....)))))))))).)))..)))..))))))))).))))))).)).
SIMILARITIES| miRBase bdi-MIR160a: 3e-16 PMRD sbi-miR160d: 5e-52 microPC miR160: 0.00000000000002 | UniProt no hits RFAM mir-160: 9e-51 |
Identical with: sbi-miR160d from PMRD (MNEST054407) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"
