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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042499
species: Sorghum bicolor
miRNA family: MIR160
source: miRBase, original name: sbi-MIR160d (MI0001507)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCGTGCGAGGAGCCAAGCA

mismatches: 3
bulges: 0

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pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCGCTTAGCTGCCAACAACTCATACTACGTTGTTAACGACGTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCA


dot-bracket secondary structure
.((.(((((((.(((((((((..(((.(((..((((............((((((....)))))))))).)))..)))..))))))))).))))))).)).



SIMILARITIES
miRBase bdi-MIR160a: 3e-16

PMRD sbi-miR160d: 5e-52

microPC miR160: 0.00000000000002
UniProt no hits

RFAM mir-160: 9e-51

Identical with: sbi-miR160d from PMRD (MNEST054407)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"




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