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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042504
species: Sorghum bicolor
miRNA family: MIR164
source: miRBase, original name: sbi-MIR164b (MI0001549)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGCT

miRNA*
 CACGTGCGCTCCTTCTCCAAC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AGAGGGGCGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGTCGTCGCTGCATGCGTGGTCGTCGTCGCAGCACGTGCGCTCCTTCTCCAACATGGCT
TCTCGCCCCCA

dot-bracket secondary structure
)(.((((((((.((.(((((.((((((((.((.(((((((((((.((.(((..(....)..).)).)).)).))))))))).)).)))))))).))))).)
)))))))))).


SIMILARITIES
miRBase bdi-MIR164c: 4.0E-13

PMRD sbi-miR164b: 2.0E-58

microPC miR164: 0.0003		UniProt no hits

RFAM 4MIR164: 6.0E-46

Identical with: sbi-miR164b from PMRD (MNEST054411)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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