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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042504
species: Sorghum bicolor
miRNA family: MIR164
source: miRBase, original name: sbi-MIR164b (MI0001549)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCT

miRNA*
CACGTGCGCTCCTTCTCCAAC

mismatches: 2
bulges: 0

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pre-miRNA
GAGGGGCGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGTCGTCGCTGCATGCGTGGTCGTCGTCGCAGCACGTGCGCTCCTTCTCCAACATGGCT
TCTCGCCCCCA


dot-bracket secondary structure
(.((((((((.((.(((((.((((((((.((.(((((((((((.((.(((..(....)..).)).)).)).))))))))).)).)))))))).))))).)
)))))))))).



SIMILARITIES
miRBase bdi-MIR164c: 0.0000000000004

PMRD sbi-miR164b: 2e-58

microPC miR164: 0.0003
UniProt no hits

RFAM MIR164: 6e-46

Identical with: sbi-miR164b from PMRD (MNEST054411)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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