ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR164
source: miRBase, original name: sbi-MIR164b (MI0001549)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCT miRNA* CACGTGCGCTCCTTCTCCAAC mismatches: 2 bulges: 0 |
pre-miRNA
GAGGGGCGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGTCGTCGCTGCATGCGTGGTCGTCGTCGCAGCACGTGCGCTCCTTCTCCAACATGGCT
TCTCGCCCCCA
dot-bracket secondary structure
(.((((((((.((.(((((.((((((((.((.(((((((((((.((.(((..(....)..).)).)).)).))))))))).)).)))))))).))))).)
)))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GAGGGGCGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGTCGTCGCTGCATGCGTGGTCGTCGTCGCAGCACGTGCGCTCCTTCTCCAACATGGCT
TCTCGCCCCCA
dot-bracket secondary structure
(.((((((((.((.(((((.((((((((.((.(((((((((((.((.(((..(....)..).)).)).)).))))))))).)).)))))))).))))).)
)))))))))).
SIMILARITIES| miRBase bdi-MIR164c: 0.0000000000004 PMRD sbi-miR164b: 2e-58 microPC miR164: 0.0003 | UniProt no hits RFAM MIR164: 6e-46 |
Identical with: sbi-miR164b from PMRD (MNEST054411) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
