ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396a (MI0001539)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
ACATGGCCCTCCTTGCCGTCTTCCACAGCTTTCTTGAACTGCATGCTGGTAGTGCTGTGTGCATCCGTTCCAATATTCCAAGAGGCAGTTCAATAAAGCT
GTGGGAAATTGCAGAGAGAGACCAG
dot-bracket secondary structure
...((((.(((.((((.((.((((((((((((.(((((((((...((((.((((.((.(.((....)).))).)))))).))..))))))))).))))))
)))))).)).)))).))).).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
ACATGGCCCTCCTTGCCGTCTTCCACAGCTTTCTTGAACTGCATGCTGGTAGTGCTGTGTGCATCCGTTCCAATATTCCAAGAGGCAGTTCAATAAAGCT
GTGGGAAATTGCAGAGAGAGACCAG
dot-bracket secondary structure
...((((.(((.((((.((.((((((((((((.(((((((((...((((.((((.((.(.((....)).))).)))))).))..))))))))).))))))
)))))).)).)))).))).).))).
SIMILARITIES| miRBase zma-MIR396a: 1e-19 PMRD sbi-miR396a: 8e-67 microPC miR396: 0.0000004 | UniProt no hits RFAM MIR396: 8e-55 |
Identical with: sbi-miR396a from PMRD (MNEST054485) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
