miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042582
species: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396a (MI0001539)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTG

miRNA*
GTTCAATAAAGCTGTGGGAAA

mismatches: 1
bulges: 0

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pre-miRNA
ACATGGCCCTCCTTGCCGTCTTCCACAGCTTTCTTGAACTGCATGCTGGTAGTGCTGTGTGCATCCGTTCCAATATTCCAAGAGGCAGTTCAATAAAGCT
GTGGGAAA
TTGCAGAGAGAGACCAG


dot-bracket secondary structure
...((((.(((.((((.((.((((((((((((.(((((((((...((((.((((.((.(.((....)).))).)))))).))..))))))))).))))))
)))))).)
).)))).))).).))).



SIMILARITIES
miRBase zma-MIR396a: 1e-19

PMRD sbi-miR396a: 8e-67

microPC miR396: 0.0000004
UniProt no hits

RFAM MIR396: 8e-55

Identical with: sbi-miR396a from PMRD (MNEST054485)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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