ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR398
source: miRBase, original name: tae-MIR398 (MI0016466)
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCCG miRNA* GGGTCGAACTGGGAACACATG mismatches: 2 bulges: 0 |
pre-miRNA
AGACGCGAGGAAATTCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCGC
CCCCGCTGGAGCCTCCTCGC
dot-bracket secondary structure
....(((((((..((((.((((((.(((.((((((((((((((((((.((..(((((.......)))))..)).))))...)))))))))))))).))).
)))))).))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
AGACGCGAGGAAATTCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCGC
CCCCGCTGGAGCCTCCTCGC
dot-bracket secondary structure
....(((((((..((((.((((((.(((.((((((((((((((((((.((..(((((.......)))))..)).))))...)))))))))))))).))).
)))))).))))..)))))))
SIMILARITIES| miRBase mtr-MIR398b: 0.00000002 PMRD tae-miR2025: 2e-49 microPC miR398: 0.0000001 | UniProt no hits RFAM MIR398: 0.0000004 |
Identical with: tae-miR2025 from PMRD (MNEST054744) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
