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Species belonging to selected taxon:

Triticum monococcum, Triticum turgidum subsp. durum, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST042645
species: Triticum aestivum
miRNA family: MIR398
source: miRBase, original name: tae-MIR398 (MI0016466)

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCGCCCCCG

miRNA*
GGGTCGAACTGGGAACACATG

mismatches: 2
bulges: 0

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pre-miRNA
AGACGCGAGGAAATTCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCGC
CCCCG
CTGGAGCCTCCTCGC


dot-bracket secondary structure
....(((((((..((((.((((((.(((.((((((((((((((((((.((..(((((.......)))))..)).))))...)))))))))))))).))).
)))))
).))))..)))))))



SIMILARITIES
miRBase mtr-MIR398b: 0.00000002

PMRD tae-miR2025: 2e-49

microPC miR398: 0.0000001
UniProt no hits

RFAM MIR398: 0.0000004

Identical with: tae-miR2025 from PMRD (MNEST054744)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"




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